I had noticed the doors on the driver's side of the truck weren't lined up great, so I took some time to adjust first the rear door, then the striker and that made the front look ok. As part of doing this, I also noticed that the roof rain gutter seal was missing on that side of the truck, and then that there was a line of holes for mounting something on the roof (also on the other side of the truck, under the seal). So, after carefully removing the seal from the parts truck w/o damaging the clips too much, I also fixed the holes by:
-using a rounded off rod to push in the holes a bit (as they were used for metal screws, which pulled the edges outwards)
-flap wheeled the area to bare steel
-soldered the holes closed
-flap wheeled it flat (so no solder was proud of the surrounding steel)
-thin coat of bondo to make it flat
Repeated on the other side.
I left it like this, as I don't have paint for it. Once I get some (doesn't have to be color matched, as this isn't visible), I'll sand it smooth and then paint.
Installed the gutter seal to finish this for today.
Decided to work on the main remaining issue with using it as a work truck, that the trailer brake controller wasn't working. There was several codes U2099 and C1112 for it. I had previously found a busted wire for one of the trailer lights, so I started w testing that there was a good wire between the TBC relay, TBC computer and the trailer connector, and there was, but using my Autel PS100, it seemed as if there was also a short to ground for that wire. So, after unwrapping the harness and examining it, there was no short to ground. It turns out the PS100 will incorrectly generate a 0 ohm reading if the probe is touched to ground, regardless of what the other lead is connected to.
So, with the harness unwrapped, I plugged in the connectors to the relay and computer, then hooked up a headlight bulb to the trailer connector, turned on the ignition and somewhat surprisingly, it flashed on briefly, but then the IP didn't report a problem (which it normally does report "Service Trailer Brake System"). And the manual slider turned the bulb on, as well as pressing the brake pedal, so it seems to be working.
I guess the problem likely is with the big connector going to the trailer brake controller computer, the connection retention mechanism seems to be partially broken, so I have to figure out how to depin it to swap over the connector from the parts truck.